fbreitwieser

pavian

🌈 Interactive analysis of metagenomics data

krakenuniq

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

bamcov

:boom: Quickly calculate and visualize sequence coverage in alignment files

sankeyD3

D3 Sankey Network Graphs from R

hiervis

Hierarchical visualization for R/Shiny

d3-hiervis

:cactus: Hierarchical visualization with D3

shinyFileTree

taxmash

Download scripts for Mash that put taxonomic information into the reference comments

cheatsheets

:ledger:

krakenuniq-manuscript-code

Supporting information and scripts for KrakenUniq (Breitwieser, Baker and Salzberg, 2018)

.vim

My .vim dotfiles and configurations.

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

bioconda-recipes

Conda recipes for the bioconda channel.

covid

covid-mortality

dotfiles-1

:wrench: .files, including ~/.macos — sensible hacker defaults for macOS

htslib

C library for high-throughput sequencing data formats

i3status-rust

Very resourcefriendly and feature-rich replacement for i3status, written in pure Rust

krakenu-mss

lubridate

Make working with dates in R just that little bit easier

Mash

Fast genome and metagenome distance estimation using MinHash

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

mortality

ncbi-taxonomy

PocketBookDic

Script to convert dictionaries to pocketbook dictionary dic-format and Koreader optimized dictionaries.

polybar

A fast and easy-to-use status bar

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

sunburstR

R htmlwidget for sequence sunburst

vimrc

windows-development-environment

:telescope: Turning Windows into an environment ready for modern development