fbreitwieser

card-krakendb

Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database

isobar

isobar - R library for the Analysis and quantitation of isobarically tagged MSMS proteomics data

comp-genomics-class

Code and examples for JHU Computational Genomics class

networkD3

D3 JavaScript Network Graphs from R

ArchGnome

Automated script to install Gnome and all its programs on Arch Linux

ariadne

Store a better zsh history and search via interactive grep

ASCIIGenome

Text Only Genome Viewer! Docs:

Blast2lca

Calculates the lowest common ancestors of each query sequence in a Blast result

buildingwidgets

repo for a htmlwidget a week documented at http://buildingwidgets.com

coursera-android-labs

Skeletons and Tests - Programming Mobile Applications for Android Handheld Systems

d3-parsets

An interactive parallel sets visualisation for D3.js.

d3-sankey

Visualize flow between nodes in a directed acyclic network.

d3.chart.sankey

Reusable D3 Sankey diagram using d3.Chart

d3heatmap

A D3.js-based heatmap htmlwidget for R

DesktopDeployR

A framework for deploying self-contained R-based applications to the desktop

DT

R Interface to the jQuery Plug-in DataTables

pheatmap

Pretty heatmaps

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

rhub

R-hub API client

sankeytree

screed

a simple read-only sequence database, designed for short reads

sgrep

Sorted grep.

shiny-phyloseq

An interactive web application for demonstrating and using phyloseq.

simple-r

Automatically exported from code.google.com/p/simple-r

snakemake_anvio

snakemake rules for running anvio

sunburstR-old

treemap

R package for treemap visualisation

typhone

An open-source, meteor-based web service and app for controlling your smartphone from your desktop.

Vennerable-1

Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.

WeeklyCDCPlot

MMWR shiny app for time series plots