fbreitwieser / krakenuniq

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

fbreitwieser/krakenuniq Issues

Support for interleaved paired-end FASTQs
Updated 17 days ago
keep database in RAM and debug
Updated a month ago
Number of unique k-mers
Updated a month ago
Which files could be deleted after building database?
Updated a month ago
Viral neighbors download (Died)
Updated 2 months ago2
`krakenuniq-download` is stochastic
Updated 2 months ago
krakenuniq build error
Closed 2 months ago
4608 at ./tools/krakenuniq-download line 775.
Closed 2 months ago4
out of memory with --preload-size 80GB at 128GB
Updated 2 months ago5
./gzstream/version:1:1: fatal error: expected unqualified-id
Closed 3 months ago2
Kraken2Uniq
Closed 4 months ago2
krakenuniq-extract-reads error
Updated 4 months ago3
Mapping errors when downloading files
Updated 4 months ago
Trouble downloading viral neighbors database
Updated 4 months ago2
krakenuniq-build error and krakenuniq results are unclassified
Updated 5 months ago
build database error
Closed 6 months ago2
Error while building the database 'std::bad_alloc'
Closed a year ago1
Clarification on hierarchical read classification with multiple databases
Updated 7 months ago2
Can't use k of 39 (must be <= 31)
Updated 7 months ago1
Metagenomic software solving similar problems as krakenUniq
Updated 7 months ago
A very long runnig time for krakenuniq
Updated 7 months ago2
krakenuniq-build error
Updated 8 months ago6
`--preload-size` not playing well with multiple databases
Closed 8 months ago2
preload-size error exits with code 0
Updated 8 months ago
Non-NCBI TaxIDs -- Mapping to NCBI?
Updated 8 months ago
running time too long
Updated 9 months ago4
Timing out with pre-loading of chunked database
Updated 9 months ago3
Error! Didn't find taxonomy ID mapping for sequence
Updated 9 months ago1
kmer found in sequence w/ taxid 1000315525 that is not in database
Updated 10 months ago1
How do I download species-specific sequences from nt Database ？
Updated 10 months ago
db-build error: JELLYFISH_BIN: unbound variable
Updated a year ago4
Parameters for building the available databases in https://benlangmead.github.io/aws-indexes/k2
Updated a year ago
db-build error: JELLYFISH_BIN: unbound variable
Updated a year ago6
Indexes with GTDB [enhancement]
Updated a year ago
Why use adapters when building the database?
Closed a year ago2
issues installing databases
Updated a year ago3
Does krakenuniq ever suppress (countable) kmers from reads?
Updated a year ago5
empty Reportfile
Updated a year ago6
Blatant miscount of kmers in krakenuniq report file
Updated a year ago3
krakenuniq-download error
Updated a year ago1
.sh: 1: dustmasker: not found
Updated a year ago1
Difference in execution times
Updated a year ago1
Possible problem in krakenuniq-extract-reads
Updated a year ago1
Error running krakenuniq in Singularity container
Closed a year ago15
KrakenUniq (read_merger.pl) fails when using symlinks as input
Updated a year ago
Errors running krakenuniq-download - "unexpected end of file" & "dustmasker: command not found"
Updated a year ago1
fungal database with krakenuniq
Updated a year ago
reports
Updated a year ago
krakenuniq-build error jellyfish parse error
Updated a year ago
krakenuniq-build error
Updated a year ago