Contains analysis scripts and results files on the datasets compiled by McIntyre et al.
Contains a Makefile to build the std and nt databases used for the analysis of all datasets.
Figures created by the scripts.
Contains Makefile that summarizes results on database k-mers and simulated random numbers with Flajolet, Heule and Ertl estimators.
Result files for the analysis of the patient samples.
Contains scripts for creating a complex test dataset from actual SRA experiments of bacterial isolates, and analyzing the results.
Tables created by the scripts (manually formatted and converted to .xlsx)