Kiran N' Bishwa (everestial)

everestial

Geek Repo

Location:Greensboro, NC

Github PK Tool:Github PK Tool

Kiran N' Bishwa's repositories

phase-extender

A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.

Language:Jupyter NotebookStargazers:13Issues:0Issues:0

CheckImageScanning

Application to scan the check image and extract data.

Language:Jupyter NotebookStargazers:1Issues:0Issues:0
Language:HTMLLicense:MITStargazers:1Issues:0Issues:0

github-slideshow

A robot powered training repository :robot:

Language:HTMLLicense:MITStargazers:1Issues:0Issues:0
Stargazers:0Issues:0Issues:0

TestOfApicalDominanceInArabidopsisLyrata

Analyses of the data from auxin inhibition assays. Includes analyses of trait measurements by treatments for several time periods (months).

Language:HTMLStargazers:1Issues:0Issues:0

vcfparser

Python parser for parsing the genomics and transcriptomics VCF data.

Language:PythonLicense:MITStargazers:3Issues:0Issues:0
Language:PythonStargazers:1Issues:0Issues:0

ASE-CADG

Pipeline for ASE (allele specific expression) using competitive alignment to diploid genome

Language:HTMLStargazers:3Issues:0Issues:0

TestSwitchErrors

This is a tutorial that shows how phaseExtender can be used for recursive improvement of haplotype phasing and how to test the phasing quality by measuring switcherrors.

Language:Jupyter NotebookStargazers:2Issues:0Issues:0

phase-stitcher

a python program to stitch the ReadBack phased haplotypes in F1 hybrids.

Language:Jupyter NotebookStargazers:6Issues:0Issues:0
Language:HTMLStargazers:1Issues:0Issues:0

VCF-Simplify

A python parser to simplify and build the VCF (Variant Call Format).

Language:PythonLicense:MITStargazers:45Issues:0Issues:0

classifier-reborn

A general classifier module to allow Bayesian and other types of classifications. A fork of cardmagic/classifier.

License:LGPL-2.1Stargazers:1Issues:0Issues:0

ScientificWorkshopIOF

To host the content related to Scientific Workshop efforts

Stargazers:1Issues:0Issues:0

SmallTools

Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.

Language:PythonLicense:GPL-3.0Stargazers:2Issues:0Issues:0

MathCollections

Collection of several math problems and their coding solutions

Language:PythonStargazers:1Issues:0Issues:0

VCDB

VERIS Community Database

Language:JavaScriptLicense:NOASSERTIONStargazers:1Issues:0Issues:0

phaser

phasing and Allele Specific Expression from RNA-seq

Language:PythonLicense:GPL-3.0Stargazers:1Issues:0Issues:0

resume.github.com

Resumes generated using the GitHub informations

Language:JavaScriptStargazers:1Issues:0Issues:0

Typora-Onigiri

Typora Theme for Japanese Texts

Language:CSSStargazers:1Issues:0Issues:0

PlotAwesome

This repo contains collections of plots and codes used to generate it.

Language:HTMLStargazers:1Issues:0Issues:0

PhaseIT

A pipeline for phasing haploptypes using short readbackphased haplotype blocks in population of samples.

Language:TeXStargazers:2Issues:0Issues:0

phaseRB

A tool for running readbackphasing on VCF using BAM (reference genome aligned genome or RNAseq reads).

Language:PythonStargazers:4Issues:0Issues:0

phase-Imputer

Phase imputation in RBphased haplotypes using first order markov chains.

License:GPL-3.0Stargazers:1Issues:0Issues:0

g2gtools

Custom genome creation and coordinate conversion

Language:PythonLicense:GPL-3.0Stargazers:1Issues:0Issues:0

cyvcf2

cython + htslib == fast VCF and BCF processing

Language:CLicense:MITStargazers:1Issues:0Issues:0