emanuega / MERlin

MERlin is an extensible analysis pipeline applied to decoding MERFISH data

emanuega/MERlin Issues

How to use the spatial plotting function
Updated 2 months ago
Test_merfish.py takes forever to run
Updated 7 months ago2
When installing MERlin using pip install -e MERlin, there is a error.
Updated 7 months ago1
Unable to identify image files matching regular expression
Updated a year ago5
Question about RNA Velocity analysis
Updated a year ago
Tables & h5py dependency error
Updated 3 years ago
tifffile "ImageJ does not support non-contiguous series"
Updated 3 years ago
Updates needed to installation instructions and requirements.txt
Updated 3 years ago
CleanCellBoundaries error
Updated 4 years ago3
MinimumDistanceDistributionPlot is blank
Updated 4 years ago
Adding in clustering
Updated 4 years ago3
GPU option?
Updated 4 years ago6
Are you going to implement cross correlation based global alignment?
Updated 4 years ago3
Future warning for item()
Closed 4 years ago1
Update snakemake writer to ignore timestamps
Closed 4 years ago
Adding run crash notification
Updated 4 years ago1
Update adaptive filter to be capabale of filtering based on in-cell data
Updated 4 years ago
Update spatial feature for shapely compatibility
Updated 4 years ago
Segmentation fault in GenerateMosaic with opencv-python 4.1.2.30
Updated 4 years ago
How to run the tests?
Updated 5 years ago9
Update version on Zhuanglab
Closed 5 years ago1
snakemake .tmp files
Updated 5 years ago
True divide runtime warning in analysis\filterbarcodes
Updated 5 years ago16
adaptive filter runtime error
Closed 5 years ago1
installation instructions
Closed 5 years ago