Segmentation fault in GenerateMosaic with opencv-python 4.1.2.30
emanuega opened this issue · comments
I encountered a segmentation fault when trying to run GenerateMosaic using opencv-python 4.1.2.30. When I downgraded opencv-python to 4.0.1.24 the problem was resolved.
Full Environment:
name: merlin_env
channels:
- defaults
dependencies: - _libgcc_mutex=0.1=main
- blas=1.0=mkl
- blosc=1.16.3=hd408876_0
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2019.11.27=0
- certifi=2019.11.28=py37_0
- hdf5=1.10.4=hb1b8bf9_0
- intel-openmp=2019.4=243
- ld_impl_linux-64=2.33.1=h53a641e_7
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libspatialindex=1.9.3=he6710b0_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- lz4-c=1.8.1.2=h14c3975_0
- lzo=2.10=h49e0be7_2
- mkl=2019.4=243
- mkl-service=2.3.0=py37he904b0f_0
- mkl_fft=1.0.15=py37ha843d7b_0
- mkl_random=1.1.0=py37hd6b4f25_0
- mock=3.0.5=py37_0
- ncurses=6.1=he6710b0_1
- numexpr=2.7.0=py37h9e4a6bb_0
- numpy=1.17.4=py37hc1035e2_0
- numpy-base=1.17.4=py37hde5b4d6_0
- openssl=1.1.1d=h7b6447c_3
- pip=19.3.1=py37_0
- pytables=3.6.1=py37h71ec239_0
- python=3.7.6=h0371630_2
- readline=7.0=h7b6447c_5
- rtree=0.8.3=py37_0
- setuptools=44.0.0=py37_0
- six=1.13.0=py37_0
- snappy=1.1.7=hbae5bb6_3
- sqlite=3.30.1=h7b6447c_0
- tk=8.6.8=hbc83047_0
- wheel=0.33.6=py37_0
- xz=5.2.4=h14c3975_4
- zlib=1.2.11=h7b6447c_3
- zstd=1.3.7=h0b5b093_0
- pip:
- alabaster==0.7.12
- appdirs==1.4.3
- attrs==19.3.0
- babel==2.8.0
- boto3==1.11.1
- botocore==1.14.1
- cachetools==4.0.0
- chardet==3.0.4
- configargparse==1.0
- coverage==5.0.3
- cycler==0.10.0
- cython==0.29.14
- datrie==0.8
- decorator==4.4.1
- docutils==0.15.2
- gitdb2==2.0.6
- gitpython==3.0.5
- google-api-core==1.15.0
- google-auth==1.10.0
- google-cloud-core==1.1.0
- google-cloud-storage==1.24.1
- google-resumable-media==0.5.0
- googleapis-common-protos==1.6.0
- h5py==2.10.0
- idna==2.8
- imagecodecs-lite==2019.12.3
- imageio==2.6.1
- imagesize==1.2.0
- importlib-metadata==1.4.0
- jinja2==2.10.3
- jmespath==0.9.4
- joblib==0.14.1
- jsonschema==3.2.0
- kiwisolver==1.1.0
- markupsafe==1.1.1
- matplotlib==3.1.2
- more-itertools==8.1.0
- networkx==2.4
- opencv-python==4.1.2.30
- packaging==20.0
- pandas==0.25.3
- pillow==7.0.0
- pluggy==0.13.1
- protobuf==3.11.2
- psutil==5.6.7
- py==1.8.1
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pyclustering==0.9.3.1
- pygments==2.5.2
- pyparsing==2.4.6
- pyqt5==5.14.1
- pyqt5-sip==12.7.0
- pyrsistent==0.15.7
- pytest==5.3.2
- pytest-cov==2.8.1
- python-dateutil==2.8.1
- python-dotenv==0.10.3
- pytz==2019.3
- pywavelets==1.1.1
- pyyaml==5.3
- ratelimiter==1.2.0.post0
- requests==2.22.0
- rsa==4.0
- s3transfer==0.3.0
- scikit-image==0.16.2
- scikit-learn==0.22.1
- scipy==1.4.1
- seaborn==0.9.0
- shapely==1.6.4.post2
- smmap2==2.0.5
- snakemake==5.9.1
- snowballstemmer==2.0.0
- sphinx==2.3.1
- sphinx-rtd-theme==0.4.3
- sphinxcontrib-applehelp==1.0.1
- sphinxcontrib-devhelp==1.0.1
- sphinxcontrib-htmlhelp==1.0.2
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.2
- sphinxcontrib-serializinghtml==1.1.3
- tifffile==2019.7.26.2
- urllib3==1.25.7
- wcwidth==0.1.8
- wrapt==1.11.2
- xmltodict==0.12.0
- zipp==0.6.0
prefix: /home/george/miniconda3/envs/merlin_env