Deepak's repositories
RO-paper-analysis
Relations Ontology (RO) paper analysis
app-support-prototype
A place to explore how we might support "apps" in Dockstore. These are long-running, interactive web services rather than batch workflows.
berkeleybop.github.io
Homepages for the Berkeley BOP.
biocontext
JSON-LD Contexts for Bioinformatics Data
biolink-api
API for linked biological knowledge
biolink-model-toolkit
A set of python functions for using the biolink model
Example-BioHackrXiv-Paper
This is a working paper that can be generated with https://BioHackrXiv.genenetwork.org/
geno-pheno-search-solr
This repository contains Solr schema, loader, related configurations, and a Dockerfile for spinning up a Solr Docker container that powers GenoPhenoSearch.
golr-schema-generator
A python library for generating a Golr Schema XML from a well defined YAML
HeliumPhenotypeSearch
Phenotype search with Annotations and Asset discovery
jtd-remote
Example of Just the Docs as a remote theme
kg-covid-19
KG hub for COVID-19 and related emerging viruses
kg-covid-19-illustrations
A repository for illustrations generated for KG-COVID-19 efforts
lens-jekyll-theme
A Jekyll version of the "Lens" theme by HTML5 UP.
monarch-ui
A modern web UI for revealing and understanding Monarch Initiative information.
mondo
Mondo ontology
mvp-module-library
Collection of modules for executing MVP Workflows
N2V
Python library for the node2vec family of algorithms
nbviewer
nbconvert as a web service: Render Jupyter Notebooks as static web pages
ncats-jenkins-pipeline
This repository can be used to drive a Jenkins Multibranch pipeline
prefixcommons-py
Prefix commons python utlities
standardsandspecs
STAGE related standards and specifications
translator-testing-framework
A testing framework for Translator using tests written in Behave
yamldown
Python library for loading and dumping "yamldown" (markdown with embedded yaml) files.