danielecook

fairseq

Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

manim

A community-maintained Python framework for creating mathematical animations.

The-Art-of-Linear-Algebra

Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

flash-attention

Fast and memory-efficient exact attention

rayon

Rayon: A data parallelism library for Rust

pkgx

the last thing you’ll install

machine-learning-articles

🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.

qsv

CSVs sliced, diced & analyzed.

simde

Implementations of SIMD instruction sets for systems which don't natively support them.

google-apis-rs

A binding and CLI generator for all Google APIs

hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

rotary-embedding-torch

Implementation of Rotary Embeddings, from the Roformer paper, in Pytorch

hydroflow

Hydro's low-level dataflow runtime

quip-sharp

grain

fastfeedforward

A repository for log-time feedforward networks

block-aligner

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

dynamic-sparse-flash-attention

Clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

ntHash

Fast hash function for DNA/RNA sequences

alfred-unicode

Preview Unicode characters and emoji in Alfred

gia

gia: Genomic Interval Arithmetic

advent-of-code-cli

A cli tool to automatically download and upload advent of code problems.

ngs

Command line utility for working with next-generation sequencing files.

grass

deeppolisher

Transformer-based sequence correction method for genome assembly polishing

ANTISEQUENCE

Rust library for processing sequencing reads.

simple-saca

Hardware go brrr bounded context suffix array construction algorithm

hifieval

a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).