Daniel-Liu-c0deb0t / block-aligner

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

https://crates.io/crates/block_aligner

Daniel-Liu-c0deb0t/block-aligner Issues

Question: Syntax for modifying the nucleotide scoring matrix
Updated 4 months ago3
`cargo.toml` in `c` directory is detected as duplicate package
Closed a year ago1
fuzzy text finding
Updated a year ago7
question on block aligner score and lowest identity allowed to be accurate
Closed 2 years ago6
Realignment
Updated 2 years ago
Thoughts on relation to / comparison with WFA
Updated 2 years ago1
Neon and related
Closed 2 years ago4
Use staticlib
Closed 2 years ago
Investigate performance regressions
Updated 2 years ago
Custom AAMatrix from C API?
Closed 2 years ago7
`rand_mutate` cannot generate consecutive insertions
Closed 2 years ago4
Is there a reason gap_open has to be > gap_extend and not >= gap_extend?
Updated 2 years ago3
Option to reuse memory when block aligner is reallocated
Closed 2 years ago
Is using -0.5 as extend penalty supported?
Closed 3 years ago2
Support Alignment of DNA sequences with C API
Updated 3 years ago1
Support alignment of protein sequences containing "*"
Updated 3 years ago1