Cytoscape Consortium

ipycytoscape

A Cytoscape Jupyter widget

cytoscape-automation

Collection of scripts that include programmatic io and control of Cytoscape

cytoscape.js-navigator

Bird's eye view pan and zoom control for Cytoscape.js.

cytoscape.js-elk

The ELK layout algorithm adapter for Cytoscape.js

cyREST

Core App: REST API module for Cytoscape

cytoscape-explore

Network visualization webapp.

docker-cytoscape-desktop

cytoscape-manual

Markdown version of Cytoscape manual

cytoscape.js-leaflet

A Cytoscape.js extension to overlay a graph (network) on top of a Leaflet map

cy-community-detection

Community Detection App for Cytoscape

cx2js

A CX to Cytoscape JS library

diffusion

A Cytoscape app to interface with the heat diffusion service

fgsea-service

js4cytoscape

JavaScript library for calling Cytoscape Automation via CyREST

web-export-templates

Parent project for all Cytoscape.js export options.

cytoscape-admin-scripts

Build and maintenance scripts for Cytoscape core developers.

legend-creator

Cytoscape3 app to create legends as annotations

analyzer

Stripped down version of Network Analyzer core app

cx

CX serialization and de-serialization in Cytoscape

enrichmentmap-service

EnrichmentMap microservice

network-merge

Core App: Network Merge

communitydetection-rest-model

communitydetection-rest-server

Community Detection REST Service

cy-ndex-2

A Cytoscape client app for the NDEx database

cy-session-cleaner

This Cytoscape 3 app cleans up sessions that have become too large

cyjs-export-full

Template for full export option in Cytoscape 3.2.0.

cytoscape.js-npm-autotweet

Automatically tweets new releases for your npm packages to your twitter account

mapSourceAndTarget

ndex-enrichment-rest-model

network-ptm-integration

This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).