snakemake / snakemake-github-action

A Github action for running a Snakemake workflow

snakemake/snakemake-github-action Issues

Bug: conda is not properly installed with v8.0.1 (stable) docker build
Closed 5 months ago6
Workflow defines configfile config/config.yml but it is not present or accessible.
Updated 9 months ago4
Feature request: Option to make failure == success
Updated 10 months ago
How to detect if steps would hang
Updated a year ago
Is `--kubernetes` flag an option?
Closed a year ago1
Use snakemake conda envs with GitHub Actions/cache
Updated a year ago2
How to save output of list-untracked
Updated a year ago
Save png of DAG using this action
Updated a year ago1
Unable to find Snakefile
Updated 2 years ago1
How to update environment dependencies?
Updated 2 years ago
configure strict priorities by executing conda config --set channel_priority strict
Closed 2 years ago2
Containerize Fails with Conda Envs
Closed 3 years ago1
possibility to set snakemake version
Updated 3 years ago
Unable to find version `v1`
Closed 3 years ago1
Snakemake `--generate-unit-tests` system breaks relative paths
Updated 3 years ago
Flag --use-singularity
Updated 3 years ago7
update README
Updated 3 years ago
snakemake: command not found in v1.4.0
Updated 4 years ago1