colinbrislawn / unite-train

πŸ„ Prebuilt ITS classifiers from the UNITE database

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unite-train

A pipeline to build Qiime2 taxonomy classifiers for the UNITE database.

Download a pre-trained classifier here! 🎁

Issues release Downloads

Running Snakemake workflow

Set up:

Run:

snakemake --cores 8 --use-conda --conda-create-envs-only
# Connect to a worker node, if needed, then
snakemake --cores 8 --use-conda --resources mem_mb=9000
# This takes about 11 hours on my machine

Reports:

snakemake --report results/report.html
snakemake --forceall --dag --dryrun | dot -Tpdf > results/dag.pdf

About

πŸ„ Prebuilt ITS classifiers from the UNITE database

License:BSD 3-Clause "New" or "Revised" License


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