Juan Caballero's repositories
snakemake-varcall
Simple snakemake workflow for WGS variant calling
gene-fusion-detector
Series of script to detec fusioned genes from long-reads sequences
mutator
Tools to mutate (SNV) genomes
SeqComplex
Algorithms to compute DNA complexity
longestORF
Translate a nucletide sequence in the 6 possible frames, shows the longest ORF detected
bioconda-recipes
Conda recipes for the bioconda channel.
Scripts
Some personal scripts that I use regularly.
uorf-detector
This is the repository for uORF-detector, a series of Perl scripts to detect upstream-Open-Reading-Frames in 5' UTR regions of transcribed genes.
RepeatLandscape
profile the repeat landscape in a genome
gbmtools
Some tools for cancer analysis.
FakeFamily
Simulation of family genome sequencing
QBM
This are a series of Perl scripts to query the BioMart API and obtain some information about the annotated genes.