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Juan Caballero (caballero)

caballero

Geek Repo

33

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3

following

34

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Location:Mexico

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codeforsystemsbiology

Juan Caballero's starred repositories

SnapATAC2

Single-cell epigenomics analysis tools

Language:PythonStargazers:199Issues:0Issues:0

MSL2_ensures_biallelic_gene_expression

code repository for manuscript - MSL2 ensures biallelic gene expression

Language:RStargazers:2Issues:0Issues:0

dorado

Oxford Nanopore's Basecaller

Language:C++License:NOASSERTIONStargazers:458Issues:0Issues:0

TheArtofHPC_pdfs

All pdfs of Victor Eijkhout's Art of HPC books and courses

Stargazers:448Issues:0Issues:0

gpt-engineer

Specify what you want it to build, the AI asks for clarification, and then builds it.

Language:PythonLicense:MITStargazers:51531Issues:0Issues:0

gpt4all

GPT4All: Chat with Local LLMs on Any Device

Language:C++License:MITStargazers:68187Issues:0Issues:0

webin-cli

Webin command line submission program.

Language:JavaLicense:Apache-2.0Stargazers:27Issues:0Issues:0

mgnify-lr

Evaluation of long-read support for the MGnify pipeline

Language:Common Workflow LanguageLicense:GPL-3.0Stargazers:6Issues:0Issues:0

Glioblastoma-Research

Language:PythonStargazers:1Issues:0Issues:0

omicsplayground

Visual self-service analytics platform for big omics data.

Language:RLicense:NOASSERTIONStargazers:118Issues:0Issues:0

divine

Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data

Language:PythonStargazers:12Issues:0Issues:0

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Language:NimLicense:MITStargazers:674Issues:0Issues:0

biobuilds

Curated collection of open-source bioinformatics tools

Language:ShellLicense:NOASSERTIONStargazers:28Issues:0Issues:0

free-programming-books

:books: Freely available programming books

License:CC-BY-4.0Stargazers:330262Issues:0Issues:0

Academic-Writing-Check

check for passive words, weasel words, duplicate words, typographical errors and words strunk & white don't like

Language:PerlStargazers:587Issues:0Issues:0

slides

slides

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RepeatEvolution

Synthetic evolution of repeat consensi

Language:PerlStargazers:2Issues:0Issues:0

phyloseq-demo

Extended demonstrations of the phyloseq package

Language:RLicense:NOASSERTIONStargazers:6Issues:0Issues:0

RepeatMatcher

Simple analysis tool to manually annotate RepeatModeler sequences

Language:PerlLicense:GPL-3.0Stargazers:1Issues:0Issues:0

GeneAtlas

GeneAtlas is simple gene enrichment in normal tissue expression profiles.

Language:PerlLicense:GPL-3.0Stargazers:1Issues:0Issues:0

RepeatLandscape

profile the repeat landscape in a genome

Language:PerlStargazers:15Issues:0Issues:0

SeqComplex

Algorithms to compute DNA complexity

Language:PerlLicense:NOASSERTIONStargazers:34Issues:0Issues:0

multiscale_segmentation

Language:PythonStargazers:2Issues:0Issues:0

gmaps

the easiest way to use Google Maps

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ggbio

Grid and ggplot2 based visualization for biological data

Language:RStargazers:110Issues:0Issues:0

reveal.js

The HTML Presentation Framework

Language:JavaScriptLicense:MITStargazers:67377Issues:0Issues:0

FakeFamily

Simulation of family genome sequencing

Language:PerlLicense:GPL-3.0Stargazers:2Issues:0Issues:0

Garlic

FakeSequence is an artificial non-functional realistic DNA sequence generator.

Language:PerlLicense:GPL-3.0Stargazers:8Issues:0Issues:0

biostar-central

Biostar Q&A

Language:PythonLicense:MITStargazers:576Issues:0Issues:0

Rnaseq

Rnaseq pipeline deliverable

Language:PythonStargazers:3Issues:0Issues:0