caballero

SeqComplex

Algorithms to compute DNA complexity

RepeatLandscape

profile the repeat landscape in a genome

Garlic

FakeSequence is an artificial non-functional realistic DNA sequence generator.

FakeFamily

Simulation of family genome sequencing

biobuilds

Curated collection of open-source bioinformatics tools

GeneAtlas

GeneAtlas is simple gene enrichment in normal tissue expression profiles.

RepeatMatcher

Simple analysis tool to manually annotate RepeatModeler sequences

snakemake-delly

snakemake-varcall

Simple snakemake workflow for WGS variant calling

AdventOfCode2020

AdventOfCode_2022

amr-sim

bacode

bioconda-recipes

Conda recipes for the bioconda channel.

caballero

caballero.github.io

FAIR_apps

fun-stuff

gbmtools

Some tools for cancer analysis.

gene-fusion-detector

Series of script to detec fusioned genes from long-reads sequences

latchbio-nf-ampliseq

leafcutter-pipeline

longestORF

Translate a nucletide sequence in the 6 possible frames, shows the longest ORF detected

miRNA_quant

mutator

Tools to mutate (SNV) genomes

nf-hackathon-2019

QBM

This are a series of Perl scripts to query the BioMart API and obtain some information about the annotated genes.

Scripts

Some personal scripts that I use regularly.

seqwell-plasmid-assembly

uorf-detector

This is the repository for uORF-detector, a series of Perl scripts to detect upstream-Open-Reading-Frames in 5' UTR regions of transcribed genes.