BridgeDb

BridgeDb

The BridgeDb Library source code

docker

BridgeDb Docker

bridgedbjs

JS client for BridgeDb.org ID mapping framework webservices

BridgeDbR

Bioconductor R package for BridgeDb

create-bridgedb-genedb

Example of script to query BioMart, parse and create a BridgeDb database

create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

datasources

Repository with the BridgeDb data source.

tiwid

This is where identifiers die

data

Repository to mimic the old data/gene_database/ API

InteractionDB

A BridgeDb Derby database to map interactions from different databases to each other. This database can be used to annotate interactions in PathVisio and Wikipathways.

BridgeDb-matlab

Functions to use the BridgeDb webservice in Matlab. BridgeDb is a tool for identifier mapping.

bridgedb-webservice

BridgeDb Webservice

BridgeDbWebservice

BridgeDb Webservice

configManagement

Config management for BridgeDb

create-bridgedb-genedb-config

BridgeDb-Examples

bridgedb.github.io

Website of the BridgeDb project

webservice.biomart

Biomart webservice plugin from org.bridgedb.webservice.biomart

webservice.bridgerest

bridgedb.cytoscape

BridgeDb App for Cytoscape 3

create-bridgedb-secondary2primary

create-nanomaterial-mappings

IdentityMappingService

The Identity Mapping Service to combine BridgeDb and the Validator

nwo-hackathon-2023

queryExpander

stories

BridgeDb Stories explain the various uses cases

swagger

Swagger file for bridgedbwebservice

Validator

VoID Validator

vocabularies

Source files for the BridgeDb ontology

Wikidata2Bridgedb

Creation of BridgeDb mapping databases from Wikidata