BridgeDb

tiwid

This is where identifiers die

BridgeDb

The BridgeDb Library source code

docker

BridgeDb Docker

bridgedb.github.io

Website of the BridgeDb project

BridgeDbWebservice

BridgeDb Webservice

datasources

Repository with the BridgeDb data source.

BridgeDb-Examples

Wikidata2Bridgedb

Creation of BridgeDb mapping databases from Wikidata

data

Repository to mimic the old data/gene_database/ API

swagger

Swagger file for bridgedbwebservice

BridgeDbR

Bioconductor R package for BridgeDb

create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

nwo-hackathon-2023

create-nanomaterial-mappings

create-bridgedb-genedb-config

bridgedbjs

JS client for BridgeDb.org ID mapping framework webservices

bridgedb-webservice

BridgeDb Webservice

create-bridgedb-genedb

Example of script to query BioMart, parse and create a BridgeDb database

create-bridgedb-secondary2primary

webservice.bridgerest

webservice.biomart

Biomart webservice plugin from org.bridgedb.webservice.biomart

InteractionDB

A BridgeDb Derby database to map interactions from different databases to each other. This database can be used to annotate interactions in PathVisio and Wikipathways.

BridgeDb-matlab

Functions to use the BridgeDb webservice in Matlab. BridgeDb is a tool for identifier mapping.

stories

BridgeDb Stories explain the various uses cases

configManagement

Config management for BridgeDb

vocabularies

Source files for the BridgeDb ontology

bridgedb.cytoscape

BridgeDb App for Cytoscape 3

Validator

VoID Validator

IdentityMappingService

The Identity Mapping Service to combine BridgeDb and the Validator

queryExpander