bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

bridgedb/create-bridgedb-metabolites Issues

[BUG] Mapping ChEMBL IDs to ChEBI IDs using the 16/04/2024 metabolite bridge file produces inconsistent duplicate ChEBI IDs
Updated 2 months ago1
possible bug in Wikidata<>HMDB mappings
Updated 2 years ago
Use schema 4 (for secondary IDs) #nwobridgedb
Closed 2 years ago1
check of 'group of stereoisomers' is included
Updated 2 years ago1
Update ChEBI secondary IDs #nwobridgedb
Closed 2 years ago4
Check HMDB blacklist item after update
Updated 2 years ago1
Check KEGG query #nwobridgedb
Closed 2 years ago1
add grant info to Figshare release #nwobridgedb
Closed 2 years ago1
Update HMDB secondary ID reading #nwobridgedb
Updated 2 years ago
need to be able to run this as Docker image
Updated 2 years ago
Jenkins build failure for names.rq
Updated 3 years ago7
Extend names.rq for additional chemical roles
Updated 3 years ago1
Check retired LIPID MAPS IDs
Closed 3 years ago4
Extend the code to handle a selection of Wikidata items differently
Updated 4 years ago7
(Jenkins) build failure for Bridgedb 2.3.8 (secondary IDs).
Closed 4 years ago1
Add test for not standard inchi's in Wikidata
Updated 4 years ago1
Add VMHlife Metabolites (Recon)
Updated 5 years ago1
Add Protein IDs for hormones?
Updated 5 years ago1
More stats for new releases
Updated 5 years ago1
Wrong InchiKeys
Closed 5 years ago6
DrugBank identifiers wrong in Derby file
Closed 5 years ago5
upgrade to BridgeDb 2.3.1
Closed 5 years ago1
Add IUPHAR <> wikidata mappings
Closed 5 years ago1
Weird Mapping HMDB
Closed 5 years ago1
No mapping to Wikidata in PV?
Closed 5 years ago2
Add drugbank <> wikidata mappings
Closed 5 years ago1
add ChEMBL<>Wikidata mappings?
Closed 5 years ago10
Update createDerby.groovy for BioDataSources
Updated 5 years ago2
check if CAS 617-48-1 gets picked up properly
Closed 5 years ago2
set up a creation job in Jenkins
Closed 6 years ago
HMDB secondary IDS
Closed 6 years ago1
Compatibility with new HMDb IDs
Closed 6 years ago1
resolve pull request merge conflict
Closed 6 years ago1
update BridgeDb
Closed 6 years ago