bridgedb / configManagement

Config management for BridgeDb

BridgeDb Config management

This repository is no longer recommended. Please use the JSON files instead.

How to use

Download scripts and set permissions

sudo git clone https://github.com/bridgedb/configManagement.git
sudo chmod +x ./configManagement/*.sh

Download geneproducts (plants, metabolites or metabolic interactions) latest files

sudo ./configManagement/downloadDatabases.sh geneproducts bridgefiles latest
sudo ./configManagement/downloadDatabases.sh geneproductsplants bridgefiles latest
sudo ./configManagement/downloadDatabases.sh metabolites bridgefiles latest.zip
sudo ./configManagement/downloadDatabases.sh metabolicinteractions bridgefiles latest.zip

mv gdb.config gdb_2019xxyy.config
sudo ./configManagement/setupDatabases.sh