Berlin Institute of Health

varfish-server

VarFish: comprehensive DNA variant analysis for diagnostics and research

sodar-server

SODAR: System for Omics Data Access and Retrieval

mehari

VEP-like tool for sequence ontology and HGVS annotation of VCF files

snappy-pipeline

SNAPPY Nucleic Acid Processing in Python

sodar-core

SODAR Core: A Django-based framework for building scientific data management web apps

reev

REEV: Explanation and Evaluation of Variants

clinvar-tsv

Pipeline for converting ClinVar XML files to easy-to-use TSV files

hgvs-rs

A port of biocommons/hgvs to the Rust programming language

annonars

Genome annotation based on Rust and RocksDB

varfish-docker-compose

Setup VarFish as using Docker Compose

cubi-tk

CUBI Tooling for SODAR, VarFish et al.

gene-ranking-shootout

A small benchmark for comparing gene ranking methods

seqrepo-rs

A port of biocommons/seqrepo to the Rust programming language

varfish-db-downloader

Download public databases for VarFish

cubi-isa-templates

CUBI ISA-Tab templates

varfish-cli

VarFish REST API client (CLI + Python package)

varfish-server-worker

Rust-based background worker for varfish-server

annonars-data-clinvar

Clinvar data builds for annonars

bioshmods

Shiny modules for bioinformatics

mehari-data-tx

Transcript data builds for mehari

sodar-cli

SODAR REST API client (CLI + Python package)

sodar-django-site

Django site template for SODAR Core based projects

hpc-access

Web interface for managing access and resource requests for the BIH cluster

Rseasnap

Uncomplicated access to sea-snap objects from R

january-presentation-bioshmods

rocksdb-utils-lookup

Utilities for using RocksDB as read-only lookup table (after initial bulk import)

seaPiper

Workflow output explorer for sea-snap

tpl-rs

varfish-docker-compose-ng

(Next-generation; in-development) VarFish Docker Compose

viguno

Versatile Interface for Genetics Utilization of Nice Ontologies