Berlin Institute of Health's repositories
gene-ranking-shootout
A small benchmark for comparing gene ranking methods
cubi-isa-templates
CUBI ISA-Tab templates
RcrashCourse2021
R Crash Course 2021
digestiflow-cli
:spaghetti: Digestiflow Command Line Client
irods-docker
Docker container that runs an iRODS server (iCAT enabled or not).
seasnap-pipeline
SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
sodar-django-site
Django site template for SODAR Core based projects
cada-prio-data
Weekly cada-prio model releases
CCISM
Single Cell Identification of Tumor Cells by Expectation Maximization
clingen-svi-comp_calibration
Data and code associated with ClinGen-SVI computational sub-group's calibration paper
clinvar-xml-rs
ClinVAR XML processing in Rust
django-cryptographic-fields
fork of django-cryptographic-fields maintained by @bihealth
django-plugins
A Simple Plugin Framework for Django (maintained by @bihealth)
edu-hpc-biomedical-research
Course: High Performance Compute in Biomedical Research
edu-hpc-crash-course
HPC Crash Course Slides
exomiser-rest-api-mock
Mocking the Exomiser REST API for VarFish development.
kiosc-docker-compose
Docker compose deployment of kiosc-server
orthomapper
Offline ortholog mapping
seasnap-pipeline-browser
Docker image build instructions for the sea-snap pipeline browser
seasnap-smoke-detector
Smoke detector for the seasnap pipeline
slurm-docker-cluster
A Slurm cluster using docker-compose
sodar-paper
SODAR publication metadata
tranter_vaccination_ASCT
code repository for Tranter et al. "Comparable CD8+ T cell responses to SARS-CoV-2 vaccination in single-cell transcriptomics of recently allogeneic transplanted patients and healthy individuals"