Al J Abadi's repositories
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
mixOmics
Master and devel repo for mixOmics on BioC
aljabadi.github.io
Code that'll help you kickstart a personal website that showcases your work as a software developer.
realestate-com-au-api
š Python wrapper for the realestate.com.au API
Altools
Some of my commonly used wrappers and function utils
scnmtseq
utils to summarise cov files from NOMeSeq over genomic regions
GGIR
Code corresponding to R package GGIR
SNPassoc
SNPassoc
dash-recipes
A collection of scripts and examples created while answering questions from the greater Dash community
mitch
An R package for multi-dimensional pathway enrichment analysis
BIRSBIO2020.scNMTseq.LIGER
BIRSBIO2020 workshop, scNMTseq data, LIGER analysis
rstudio
RStudio is an integrated development environment (IDE) for R
SARS-CoV-2
This is a mirrored version of the main repository at gitlab. Please submit any issues to the gitlab repository.
BIRSBIO2020.scNMTseq.PLS
BIRS Bio-integration 2020 scNMTseq challenge analysis using PLS approach
whitePaper
Manubot for white paper
ReactomePA
Reactome Pathway Analysis
roxygen2
Generate R package documentation from inline R comments
PLSDAbatch
R package for batch effect correction
scnmt_gastrulation
scNMT-seq gastrulation
SingleCellMultiModal
Single Cell multimodal data scripts for downloading datasets