Al J Abadi's repositories
awesome-multi-omics
List of software packages for multi-omics analysis
Banff_reproducible_analysis_example
A reproducible Rproject using renv
BiocParallel
Bioconductor facilities for parallel evaluation
BIRSBIO2020.scNMTseq.MOSAIC
Multi-Omics Supervised Integrative Clustering (MSOAIC) analysis on scNMTseq data for BIRSBIO2020
BuildABiocWorkshop2020
Template for building a bioconductor workshop package using github actions
FootprintMethods_on_scRNAseq
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
jonocarroll
Jonathan Carroll
mixOmics2
mixOmics supporting MultiAssayExperiment class - in development
MOFA
Multi-Omics Factor Analysis
MOFA2
Multi-Omics Factor Analysis V2 (MOFA+)
MultiAssayExperiment
Bioconductor package for management of multi-assay data
propr
An R package to calculate proportionality between vectors of compositional data
remotes
Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs
sc_sPLS
Pilot sPLS analysis of joint-profiled AML cells
scater
Clone of the Bioconductor repository for the scater package.
scNMT_seq_gastrulation
Hackathon Analyses
SCTranform-performance
Using CellBench Data
sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
SingleCellThoughts
Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow, see https://ltla.github.io/SingleCellThoughts for the compiled version.
The-Elements-of-Statistical-Learning-Python-Notebooks
A series of Python Jupyter notebooks that help you better understand "The Elements of Statistical Learning" book
TravisTest
Test repo to test things on Travis CI