Al J Abadi's repositories
BIRSBIO2020.scNMTseq.MOSAIC
Multi-Omics Supervised Integrative Clustering (MSOAIC) analysis on scNMTseq data for BIRSBIO2020
scater
Clone of the Bioconductor repository for the scater package.
remotes
Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs
jonocarroll
Jonathan Carroll
BiocParallel
Bioconductor facilities for parallel evaluation
Banff_reproducible_analysis_example
A reproducible Rproject using renv
scNMT_seq_gastrulation
Hackathon Analyses
BuildABiocWorkshop2020
Template for building a bioconductor workshop package using github actions
awesome-multi-omics
List of software packages for multi-omics analysis
MOFA
Multi-Omics Factor Analysis
MOFA2
Multi-Omics Factor Analysis V2 (MOFA+)
FootprintMethods_on_scRNAseq
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
The-Elements-of-Statistical-Learning-Python-Notebooks
A series of Python Jupyter notebooks that help you better understand "The Elements of Statistical Learning" book
TravisTest
Test repo to test things on Travis CI
SCTranform-performance
Using CellBench Data
propr
An R package to calculate proportionality between vectors of compositional data
sc_sPLS
Pilot sPLS analysis of joint-profiled AML cells
sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
MultiAssayExperiment
Bioconductor package for management of multi-assay data
mixOmics2
mixOmics supporting MultiAssayExperiment class - in development
SingleCellThoughts
Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow, see https://ltla.github.io/SingleCellThoughts for the compiled version.