Al J Abadi's repositories
r-source
R Source Code
MINT_sPLSDA
Application of mixOmics' MINT tool in Single Cell Data Analysis
badgecreatr
Quickly place relevant badges at the top of your readme, stop copy pasting, start on your project
Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
HVGDetection2018
Justification for the variance modelling and HVG detection methods in scran.
CV
RJH Curriculum Vitae
cheat
My personal cheat sheets
simpleSingleCell_book
This is a trial bookdown version of a forked repositry
simpleSingleCell
Clone of the Bioconductor repository for the simpleSingleCell workflow, see http://bioconductor.org/packages/devel/workflows/html/simpleSingleCell.html for the official development version.
scRNAseq_clustering_comparison
A study to compare methods for clustering of scRNA-seq data
r4ds
R for data science
umap-1
Uniform Manifold Approximation and Projection - R package
plotly
An interactive graphing library for R
SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
spartan-examples
Examples for the Spartan HPC cluster.
umap
Uniform Manifold Approximation and Projection
OzSingleCells2018Workshop
Materials for the Oz Single Cells 2018 informatics workshop lead by Joseph Powell and Anne Senabouth
data-science-live-book
An open source book to learn data science, data analysis and machine learning, suitable for all ages!
bookdown-demo
A minimal book example using bookdown
coseq
Co-Expression Analysis of Sequencing Data
projects
a list of all projects
easy-data
easy access to benchmark datasets
scNMT-seq
single-cell Nucleosome Methylation Transcription
DrImpute
Imputing dropout events in single-cell RNA-sequencing data.
MachineLearningIntro
Machine learning use cases for teaching