Al J Abadi's repositories
BIRSBIO2020.scNMTseq.PLS
BIRS Bio-integration 2020 scNMTseq challenge analysis using PLS approach
aljabadi.github.io
Code that'll help you kickstart a personal website that showcases your work as a software developer.
Altools
Some of my commonly used wrappers and function utils
BIRSBIO2020.scNMTseq.LIGER
BIRSBIO2020 workshop, scNMTseq data, LIGER analysis
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
dash-recipes
A collection of scripts and examples created while answering questions from the greater Dash community
GGIR
Code corresponding to R package GGIR
mitch
An R package for multi-dimensional pathway enrichment analysis
mixOmics
Master and devel repo for mixOmics on BioC
PLSDAbatch
R package for batch effect correction
ReactomePA
Reactome Pathway Analysis
realestate-com-au-api
š Python wrapper for the realestate.com.au API
roxygen2
Generate R package documentation from inline R comments
rstudio
RStudio is an integrated development environment (IDE) for R
SARS-CoV-2
This is a mirrored version of the main repository at gitlab. Please submit any issues to the gitlab repository.
scnmt_gastrulation
scNMT-seq gastrulation
scnmtseq
utils to summarise cov files from NOMeSeq over genomic regions
SingleCellMultiModal
Single Cell multimodal data scripts for downloading datasets
SNPassoc
SNPassoc
whitePaper
Manubot for white paper