aertslab's repositories
ATAC-seq-analysis
Some scripts for ATAC-seq data analysis
SCopeLoomPy
A Python notebook to create .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters and markers, compatible with SCope
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
INCLUSive
motif finding library and application that can be used to search for potential transcription factors.
MACS
MACS -- Model-based Analysis of ChIP-Seq
ngsutils
Tools for next-generation sequencing analysis
RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Database for RcisTarget
toucan
TOUCAN is a workbench for regulatory sequence analysis on metazoan genomes : comparative genomics, detection of significant transcription factor binding sites, and detection of cis-regulatory modules (combinations of binding sites) in sets of coexpressed/coregulated genes. It is a platform independent, standalone Java application that is tightly linked with Ensembl, and was built using the BioJava package. SOAP web services are used to remotely access multiple algorithms for comparative genomics, motif detection, and module detection.