PUMATAC
Pipeline for Universal Mapping of ATAC-seq
A detailed, step-by-step tutorial with examples is available here.
If PUMATAC is useful for your research, consider citing:
- PUMATAC All Versions (latest): 10.5281/zenodo.7764892.
- Our Nature Biotechnology article: 10.1038/s41587-023-01881-x.
Currently, a preprocesing workflow is available, which will take fastq inputs, apply barcode correction, read trimming, bwa mapping, and output bam and fragments files for further downstream analysis.