Xinglab / CLAM

CLIP-seq Analysis of Multi-mapped reads

Xinglab/CLAM Issues

Empty annotate file with "inconsistent naming convention for record"
Updated a year ago
Question about permutation_callpeak
Updated 2 years ago
Can CLAM be used for isoform-level data
Updated 3 years ago
Library normalization error. Also, peaks at non-genic sequences.
Updated 3 years ago2
syntaxerror while running permutation_peakcaller
Updated 3 years ago2
some question about CLAM
Closed 3 years ago1
question in software
Closed 3 years ago4
callpeaks The number of peaks is 0
Closed 4 years ago3
CLAM peak_annotator error: TypeError: catching classes that do not inherit from BaseException is not allowed
Closed 4 years ago1
Requirements versions
Closed 4 years ago1
Clarification on parameters
Closed 4 years ago4
syntax error in permutation_peakcaller.py
Closed 4 years ago
Could CLAM analyze CLIP data in plants
Closed 4 years ago2
permutation_peakcaller.py is not ported to python3
Closed 4 years ago2
Identifying enrichment at repeats
Closed 4 years ago2
Multiple controls?
Closed 4 years ago1
Could not find suitable distribution for Requirement.parse('pybedtoolsmpmath')
Closed 5 years ago
CIGAR and query sequence lengths differ error
Closed 5 years ago