Myc-regulated alternative splicing events in aggressive prostate cancer
Scripts for plotting figures and running analysis throughout the manuscript
Folders or files of scripts are named following this format: 'figure index'.'plot/analysis name'
Notes
- Customized scripts are hard-coded for specific analysis or plots.
- For similar type of figure/analysis, only show one script as an example.
- Scatter plots of pathway-AS correlation are generated by PEGASAS pipeline(https://github.com/Xinglab/PEGASAS)
- Sashimi plots are generated by rmats2sashimiplot(https://github.com/Xinglab/rmats2sashimiplot)
- Generating PEGASAS input from rMATS output(custom procedure for the analysis in the paper)
Contact
Yang Pan panyang@ucla.edu Yi Xing yxing@ucla.edu
Citation
Phillips J.W.*, Pan Y.*, Tsai B.L., Xie Z., Demirdjian L., Xiao W., Yang H.T., Zhang Y., Lin C.H., Cheng D., Hu Q., Liu S., Black D.L., Witte O.N.+, Xing Y.+ (2020) Pathway-guided analysis identifies Myc-dependent alternative pre-mRNA splicing in aggressive prostate cancers. PNAS, 117(10):5269-79 (+ joint corresponding authors; * joint first authors)