Wenchao Lin's repositories
fasta_length_hist
Script to plot the histogram of fasta lengths
wechat_jump_jump
用Python+Opencv让电脑帮你自动玩微信跳一跳
acc2tax
Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings
apps-scripts
Miscellaneous scripts for applications of PacBio systems
berokka
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
BioNanoAnalyst
BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.
C3S-LAA
Clustering of Circular Consensus Sequences (C3S) for Long Amplicon Analysis of PacBio Data
DAGflow
Module to create DAG Task and Manage Task on SGE
DCNet
DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch
DeepLearningZeroToAll
TensorFlow Basic Tutorial Labs
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
dnds
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
FALCON
FALCON: experimental PacBio diploid assembler
fygimbal
Tools for talking to the Feiyu Tech gimbal via serial
HIFI-barcode-pacbio
HIFI-barcodes project, source code for PacBio data
Hisat-RNAseq-pipeline
Hisat mapping 流程
IsoSeq3
IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
meth-report-generator
甲基化报告自动化
myTyper
do some interesting
NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
OptiType
Precision HLA typing from next-generation sequencing data
racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116
sgLink
de novo assembler using simhash graph (sg) for PacBio and Oxford Nanopore data.
somatic_pipeline
肿瘤体细胞突变检测流程（组织、cfDNA均可，需要有对照）
taxadb
:hatching_chick: locally query the ncbi taxonomy
wtdbg-1.2.8
Important update of wtdbg