Wenchao Lin's repositories
assembly-stats
Get assembly statistics from FASTA and FASTQ files
assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
axidraw
Software for the AxiDraw drawing machine
bio_assembly_refinement
Tools to refine/finish an assembly
canu
A single molecule sequence assembler for genomes large and small.
civic-server
Backend Server for CIViC Project
fastadmin
FastAdmin是一款基于ThinkPHP5+Bootstrap的极速后台开发框架。
graphmap
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
HLA
xHLA: Fast and accurate HLA typing from short read sequence data
koeken
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
LociTools
Tools to support Long Amplicon Analysis for SMRT Sequencing
MECAT
MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
oranchelo-icon-theme
:tangerine: Oranchelo icon theme by http://zayronxio.deviantart.com/
pacbio-tools
Tools for PacBio Sequel data analysis
PacBioFileFormats
Specifications for PacBio® native file formats
PB_Phasing
PacBio reads haplotype phasing
pbbam
PacBio BAM C++ library, with SWIG bindings
PBSIM-PacBio-Simulator
This is an updated mirror of the original PacBio Read Simulator
qstat-pretty
Pretty GridEngine, Torque and Platform LSF status tables
seqan
SeqAn's official repository.
sequelOverview
Use Sequel SMRT Link Web Services API to show Statics Information of All Runs
smrtlink-mod
modifyed Pacbio smrtlink UI
smrtlinkr
R package to interface with SMRTLink REST API
wtdbg
A fuzzy Bruijn graph approach to long noisy reads assembly