WatsonWoo's repositories
3DSRNGTool
Pokemon 3DS RNG Tool
awesome-courses
:books: List of awesome university courses for learning Computer Science!
bio_scripts
Practical, reusable scripts for bioinformatics
classifier
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
Learning-Perl-Sample-Files
Extra files for use with Learning Perl
MetaMicrobiome
MetaMicrobiome: an R package for the meta-analysis and visualization of microbiome.
motifStack.documentation
documentation of motifStack
MVP
A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
Phylo_Wrapper_Scripts
Scripts to help automate various phylogenetic or phylogeography programs (Admixture, RAxML, CLUMPP + DISTRUCT). Also includes a script for replacing sample or taxon names in input files.
PopLDdecay
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
Reseqtools
A Toolkit for analyzing next-generation DNA Re-Sequencing data
rna-seq-diff-exprn
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).
Structure_Clumpp_Spatial_mapping_R
Rmarkdown scripts and test files for running STRUCTURE analysis, combining replicates with CLUMPP, and generating assignment barplots and spatial interpolation of ancestry coefficient