WatsonWoo

Amplicon

High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis

atlas

ATLAS - Three commands to start analysing your metagenome data

biobakery

bioBakery tools for meta'omic profiling

circlize

Circular visualization in R

clusterProfiler

:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters

ComplexHeatmap

Make Complex Heatmaps

deepTools

Tools to process and analyze deep sequencing data.

DOSE

:mask: Disease Ontology Semantic and Enrichment analysis

ggpubr

'ggplot2' Based Publication Ready Plots

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

ggtreeExtra

:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

GOSemSim

:golf: GO-terms Semantic Similarity Measures

Hackintosh-NUC10i7

insight

:crystal_ball: Easy access to model information for various model objects

Metagenome

Metagenome analysis pipeline

MicrobiotaProcessWorkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

pairwiseComparisons

Pairwise comparison tests for one-way designs 🔬📝

pophelper

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

qiime2R

Import qiime2 artifacts to R

ReactomePA

Reactome Pathway Analysis

shinyCircos

an R/shiny application for creation of Circos plot interactively

snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

STRUCTUREPipelines

Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)

survminer

Survival Analysis and Visualization

Training-modules

Materials for short, half-day workshops

treedata-book

:books: a complete reference book for treeio, tidytree and ggtree packages

treeio-1

:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output

UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

veusz

Veusz scientific plotting application