ggtreeExtra: An R Package To Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”.
‘ggtreeExtra’ extends the method for mapping and visualizing associated data on phylogenetic tree using ‘ggtree’. These associated data can be mapped to circular layout, fan layout, or other layout tree built by ‘ggtree’ with the grammar of ‘ggplot2’.
✍️ Author
Shuangbin Xu and GuangChuang Yu
School of Basic Medical Sciences, Southern Medical University.
If you use ggtreeExtra
in published research. Please cite the paper:
S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou, W Tang, T Feng, M Chen, L Zhan, T Wu, E Hu and G Yu*. ggtreeExtra: Compact visualization of richly annotated phylogenetic data. Research Square doi: 10.21203/rs.3.rs-155672/v2.
⏬ Installation
The development version from github
:
if (!requireNamespace("devtools", quietly=TRUE))
install.packages("devtools")
devtools::install_github("xiangpin/ggtreeExtra")
The released version from
Bioconductor
:
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
## BiocManager::install("BiocUpgrade") ## you may need this
BiocManager::install("ggtreeExtra")
🔰 Usage
Please refer to the online vignette.
💖 Contributing
We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.