Tharos-ux / pancat

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

https://tharos-ux.github.io/pangenome-notes/

Tharos-ux/pancat Issues

Help Needed to Understand Error Message on 'grapher' and 'reconstruct'
Updated 13 days ago5
Plooting a graph with new library leads to an error
Closed 6 months ago1
Using `grapher` or `stats` on a graph without paths raises error
Closed 6 months ago1
Deleted dependency detected
Closed 6 months ago1
Update tool to be compatible with new distribution of gfagraphs lib
Closed 7 months ago1
Loops within graphs extracted with `isolate` or `neighborhood` causes `grapher` to fall in infinite loop
Closed 4 months ago2
Path selection with `isolate` is messy in case of loops
Closed 4 months ago2
Loops are not taking care of by `offset`
Closed 8 months ago1
BubbleGun issue with Cactus graph disables usage of command `neighborhood` on such graphs
Closed 8 months ago1
Complete pangenome graph assertion
Closed 6 months ago3
pangraphs is not taking care of inversions
Closed 8 months ago4
Better display of node sizes in `grapher`
Closed 9 months ago4
Fix `grapher` wrong path args
Closed 9 months ago1
Add possibility to issue basic stats without plotting
Closed 9 months ago1
Get rid of "-g" parameter
Closed 9 months ago1