Tharos-ux / pancat

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

Home Page:https://tharos-ux.github.io/pangenome-notes/

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Better display of node sizes in `grapher`

Tharos-ux opened this issue · comments

It has been determined the best way to inform the user of which size is the current segment is to use colors, but by classes (example: blue = 1-10bp, green = 10-50bp...)

Functionality added (needs updates Tharos-ux/gfagraphs@974075e and Tharos-ux/tharos-pytools@f4236a0 on dependencies)

Choosing custom color classes functionality will be added soon.

Command-line argument -b added.
Colors boundaries by size can be defined as such : -b 50 200 will give 3 classes, one for nodes between 0 and 50 bp, one for nodes between 51 and 200 bp, and one for nodes bigger than 201 bp

Legends needs debugging (no colors for nodes)