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Tharos-ux / pancat

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

Home Page:https://tharos-ux.github.io/pangenome-notes/

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Fix `grapher` wrong path args

Tharos-ux opened this issue · comments

commented

As of now, output is given as the form of path + job name. Would be better if user only gives the path to the output file.

commented

Fixed in commit 3b7073d. WARNING: requires update from dependency tharos-pytools (commit Tharos-ux/tharos-pytools@4522677) with pip install tharos-pytools --upgrade (>=0.0.17).

Now, the param -j/--job_name does not exists anymore. The param out accepts relative and absolute paths, with or without extension, with our without file name. If the folder arborescence does not exists, it will be created.