Tharos-ux / pancat

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

Home Page:https://tharos-ux.github.io/pangenome-notes/

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pangraphs is not taking care of inversions

Tharos-ux opened this issue · comments

The commands reconstruct and edit are not aware of inversions. It will yield incorrect sequences, or refuse to do comparison because this is not correctly implemented.

reconstruct is fixed, with upgrades on it's internals. Now it correctly uses the lib.

fix has been deployed for edit, needs testing before closing as solved

fix is tested for reconstruct and works in 3339054

After extensive testing, we can see this issue as solved.