Sidy2015's repositories
IBRAP_codes
codes used to generate IBRAP publication data and figures.
AtacSeq_Setdb1
Atac-Seq Analysis of Setdb1-Ko mice muscle stem cells
Bioinformatics-Workshops
Workshops presented by the Gladstone Bioinformatics Core
bollito
A single-cell RNA-seq pipeline
course-material
Course material for the Action Nationale de Formation (ANF): Exploration de la diversité taxonomique des écosystèmes par metabarcoding
formation_fair_2022
projet de formation au pratiques FAIR
genomics-analysis-pipelines
Pipeline codes for analyzing various genomics datasets based on MACS3
IBRAP
single-cell RNA-sequencing integrative, benchmarking tool.
Mdx_Lama2
Single-Nuclei RNASeq Analysis of Lama2-Dystrophic Mice muscle cells
python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
sanbomics
scripts and notebooks from sanbomics
SARTools
Statistical Analysis of RNA-Seq Tools
scCustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
scib-pipeline
Snakemake pipeline that works with the scIB package to benchmark data integration methods.
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
sdsu-docker-workshop
SDSU Data Science Symposium 2024 - Docker Workshop
SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
single-cell-training
Website hosted at https://sib-swiss.github.io/single-cell-training/latest/
skill-assessments
Training requirements for joining projects
somitogenesis2022
Code related to the mouse somitogenesis project
wrangling-genomics
The original wrangling-genomics lesson edited to accommodate Biocluster usage rather than AWS.