Immune healthy atlas
https://drive.google.com/file/d/1oKpcxQSm238SMNY77TAR5bzKUMIqgGU_/view?usp=sharing
PBMC IFN-beta
https://drive.google.com/file/d/1wg_21to_sNzDmoWq6vOxWdG4-9ZWldql/view?usp=sharing
PBMC COVID-19
https://drive.google.com/file/d/1WhmpTHoDXLyq4sOc6viRDEuCZ8Nz2q86/view?usp=sharing
Mouse endocrinogenesis
https://drive.google.com/file/d/1lJ1AdHsfdiQHDaaO6eG9F95USmMBXOkW/view?usp=sharing
Heart from scVI used for the integration benchmark
https://drive.google.com/file/d/1Z2ZFTotQxwth3jUGCPiawq-ZCOPlgKBy/view?usp=sharing
Code to run
https://github.com/theislab/scarches/tree/soft_new_mask
For the new api use
https://github.com/theislab/scarches