Sidy2015

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

CellOracle

This is the alpha version of the CellOracle package

gcp-for-bioinformatics

GCP for Bioinformatics Researchers

aws-for-bioinformatics

AWS for Bioinformatics Researchers

MelBioInf_docs

Melbourne Bioinformatics documentation in markdown format

bio-data-zoo

Example genomics data for tool developers

hypeR

An R Package for Geneset Enrichment Workflows

LeCoinStat

Repo de tous les codes et toutes les présentations de la chaîne Youtube LeCoinStat

sdsu-docker-workshop

SDSU Data Science Symposium 2024 - Docker Workshop

TFvelo

quarto-tricks

A set of tips and tricks for Quarto

ezSingleCell2

scPDAC

R code used to analyze single cell PDAC data

asc_seurat

shinygo

Benchmarking-integration-of-differential-expression

UnivCambridge_ScRnaSeqIntro_Base

cshl_rstats_genome_scale_2023

CSHL Statistical Analysis of Genome Scale Data 2023

OmixHub

cshl_2022

Collection of material to use for CSHL's Single Cell Analysis course 2022

SingleCell_RNASeq_Sept23

Repo for September 2023

ref_snake

Snakemake workflow to automatically build and organize reference genomes for common alignment tasks

scMuscle2

Curation and analysis of skeletal muscle single-cell data across species

seutils

Utility functions for Seurat

TranscriptDE-code

CSHLProgForBio

germ_nucleome

SpatialAnalysis_DMD_mice

Skeletal muscle spatial analysis scripts used for processing of Visium data obtained from two wildtypes: C57BL10 and DBA/2J and two DMD mouse models: mdx and D2-mdx. Ten weeks old male mice, 10micron thick sections of quadriceps.

IBRAP_codes

codes used to generate IBRAP publication data and figures.