Ravindra Raut's repositories
ExplorATEproject
R package to explore active transposable elements with RNA-seq data
personal-website
Personal Website
TEs_genes_relationship_pipeline
Distribution of TEs and their relationship to genes in host genome
cs-video-courses
List of Computer Science courses with video lectures.
CV-1
:scroll: My Data Driven CV written with R, YAML, & LaTeX
DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
ggcoverage
Visualize and annotate genomic coverage with ggplot2
ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
ggtreeExtra
:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
github-slideshow
A robot powered training repository :robot:
iqtree_full
input for iqtree intact LTR
Kishore901
Github profile
MCHelper
MCHelper: An automatic tool to curate transposable element libraries
MDNotebooks
Jupyter Notebooks for Molecular Dynamics
Python-for-Biologist
some simple python codes for biology
Random_Scripts
Scripts I made for random tasks
recount-brain-bog19
Poster for EMBO2021-The Mobile Genome
repeatR
read and analyse RepeatMasker output
resume-1
my resume built in R with pagedown::html_resume
seurat
R toolkit for single cell genomics
TE_ManAnnot
Accompanying repository for our publications on manual curation methods for Transposable Elements.
training-collection
Collection of bioinformatics training materials
treeio
:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output