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Ravindra Raut (Ravindra-Raut)

Ravindra-Raut

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Location:Bangalore

Home Page:https://ravindra-raut.netlify.app/

Twitter:@ravi__raut

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Ravindra Raut's starred repositories

training-collection

Collection of bioinformatics training materials

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applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

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ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

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rrtools

rrtools: Tools for Writing Reproducible Research in R

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DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

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awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

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EDTA

Extensive de-novo TE Annotator

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ggcoverage

Visualize and annotate genomic coverage with ggplot2

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RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

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EarlGrey

Earl Grey: A fully automated TE curation and annotation pipeline

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xTea

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

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CV

:scroll: My Data Driven CV written with R, YAML, & LaTeX

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12-days-of-biopython

12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real life examples.

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LTR_Finder

LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.

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GROMACS-Protein-Ligand

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repeatR

read and analyse RepeatMasker output

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GeneTEFlow

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TE_ManAnnot

Accompanying repository for our publications on manual curation methods for Transposable Elements.

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Lab_Info

info and docs for the Wright Lab

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nf-repeatmasking

Nextflow workflow for automatic repeat detection, classification and masking

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chromoMap

:exclamation: This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data

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intact-LTR-RTs

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blueberry-berry-development

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ETE_demo

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PracticalPythonProgrammingForBiologists

An introduction to python programming for Biologists and Bioinformaticians

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LTR_retrotransposon

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earlgrey-te

Biodiversity Genomics Academy 2023: Classifying Transposable Elements with Earl Grey TE

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GROMACS-Protein-Ligand

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nf-repeatmasking

Nextflow workflow for automatic repeat detection, classification and masking

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evo-bio-cc

Mirror to my contributions to the Crash Course in Evolutionary Biology

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