Ravindra Raut's repositories
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
AppliedGenomeResearch
course about NGS data processing: genomics and transcriptomics
berd_r_courses
Slides and materials for the OHSU OCTRI BERD R courses
biopython.github.io
Source of biopython.org website, migrated from MediaWiki
bootcamp
Biocore bootcamp
bosc_materials
Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/
complex_figure_examples
Gallery and R code for published scientific figures
DS-DM-training
DS-DM-training
EDTA
Extensive de-novo TE Annotator
evop2020
Python in 2 days for EVOP 2020 in Berlin
ggfree
ggplot2-style plots with base R graphics
gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
grabseqs
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
harrypotter
🎨 Harry Potter inspired palette for R
karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
learning-bioinformatics-at-home
resources for learning bioinformatics
nanoseq
Nanopore demultiplexing, QC and alignment pipeline
NGS_Course
Course on analysis of NGS data (RNA-Seq. and ATAC-Seq.) using Galaxy
Online_R_learning
Online R learning project for advanced undergrads during the COVID-19 pandemic
PDA19
PDA19 - Proteomics Data Analysis (2019)
pfb2019
Programming for Biology 2019
physaliaTEcourse
Course material from Physalia Transposable Elements Course 2018
r2d3
R Interface to D3 Visualizations
RAD_analysis_workflow
A bioinformatics protocol for analysing genotypes using restriction site associated DNA sequencing data
rearrr
Rearrrange data by a set of methods
RepeatModeler
De-Novo Repeat Discovery Tool
sangeranalyseR-documentation
The Read the Doc documentation repository for sangeranalyseR R package
sig-bio-shiny
A standalone R shiny application for doing significant biology on a set of genes
slamseq
SLAMSeq processing and analysis pipeline
TETools
Dfam Transposable Element Tools Docker container.