JinfengChen's repositories
Bioinformatics_Blogs
Blog bioinformatics
huxpro.github.io
My Blog / Jekyll Themes / PWA
JinfengChen.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
jekyll-theme-chirpy
A Jekyll theme with responsive web design that focuses on text presentation.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
smchet-challenge
Data related to the ICGC-TCGA DREAM Somatic Mutation Calling - Tumour Heterogeneity Challenge.
velocyto.R
Modified version of velocyto.R to export arrow coordinate without setting returndetails to True
pwgs_snakemake
Snakemake pipeline for running PhyloWGS on NIH Biowulf Cluster
docker2singularity
A docker image for converting docker images to singularity images.
vartrix
Single-Cell Genotyping Tool
Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
ComplexHeatmap
Make Complex Heatmaps
multimodal-scRNA-seq
Figure depicting the breadth of multimodal scRNA-seq technologies
pb-assembly
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
awesome-python-applications
💿 Free software that works great, which also happens to be open-source Python.
CNT-MD
Software for inferring the copy-number profiles of tumor clones and their evolution from fractional copy numbers obtained from multi-sample bulk sequencing data.
stanford-cs-229-machine-learning
VIP cheatsheets for Stanford's CS 229 Machine Learning
mscaffolder
A comparative genome scaffolding tool