JinfengChen

Bionano_hybrid_na12878

Intron

TEorthology

Script to help assessing the evolutionary history of a TE family

Epigenome

MPR_install

smRNA

Transposition

Workshop

Bioinformatics-Training

Bioinformatics training resources

combined-pvalues

combining p-values using modified stouffer-liptak for spatially correlated results (probes)

deepTools

Tools to process and analyze deep sequencing data.

finishingTool

finshingTool

Fix_ID

Genomic_plot

Heliconius_melpomene_version_2

Heliconius melpomene genome assembly version 2

Irys-scaffolding

scripts to parse IrysView output

LACHESIS

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

MeGAMerge

MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)

mirna

microRNA profiling pipeline

multibreak-sv

MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combination of sequencing platforms.

Nested_insertion

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

RelocaTE2_mPing

RelocaTE2_release

Relocate_i

RIL_update

selectionTools

Pipeline to take VCF through to Selection Analysis.

SV_blackregion

Transcriptome