Beast code in Giters

JinfengChen's repositories

GenomeAlign

Language:Perl8 40

vcf-tab-to-fasta

Automatically exported from code.google.com/p/vcf-tab-to-fasta

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quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Language:Python1 20

Transposon_age

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bamTobw

Convert BAM files to bigWig files with a simple command

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blasr

This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.

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cdhit

Automatically exported from code.google.com/p/cdhit

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chm1_scripts

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CIRCfinder

A pipeline to map junction reads for circular intronic RNAs (ciRNAs)

Language:PythonMIT000

DevNet

The DevNet project on github stores the PacBio DevNet website.

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Draw_Gene_Variation

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dscam_nanopore

Dscam isoform analysis on Nanopore Data

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Figures_QTL

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Gene_Exp_Microarray

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Git

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Git_branch

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Intron_mping

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jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

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LOD_curve

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LOD_GWS

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mTEA

Mosquito TE Annotation

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pblat

parallelized blat with multi-threads support

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planets

test planets

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PyVCF

A Variant Call Format reader for Python.

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Qpcr

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sparseMEM-big

Big-genome modification to sparseMEM from Khan et al.

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splitSNP

Small utility to extract reads from a BAM file that cover a specified SNP or deletion, separated by allele.

Language:Python020

Submission_NCBI

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Target

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Trim_transposon

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