JinfengChen

Scripts

RelocaTE2

RelocaTE2

Bioinformatics_Blogs

Blog bioinformatics

UCR_scripts

assign

awesome-python-applications

💿 Free software that works great, which also happens to be open-source Python.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Canopy

Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.

CNT-MD

Software for inferring the copy-number profiles of tumor clones and their evolution from fractional copy numbers obtained from multi-sample bulk sequencing data.

ComplexHeatmap

Make Complex Heatmaps

docker2singularity

A docker image for converting docker images to singularity images.

Docker_Container

fairchild

huxpro.github.io

My Blog / Jekyll Themes / PWA

ITH_TCGA

jekyll-theme-chirpy

A Jekyll theme with responsive web design that focuses on text presentation.

JinfengChen.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

MEA

mscaffolder

A comparative genome scaffolding tool

multimodal-scRNA-seq

Figure depicting the breadth of multimodal scRNA-seq technologies

pb-assembly

PacBio Assembly Tool Suite: Reads in ⇨ Assembly out

Primer3

pwgs_snakemake

Snakemake pipeline for running PhyloWGS on NIH Biowulf Cluster

smchet-challenge

Data related to the ICGC-TCGA DREAM Somatic Mutation Calling - Tumour Heterogeneity Challenge.

stanford-cs-229-machine-learning

VIP cheatsheets for Stanford's CS 229 Machine Learning

tnbc_scrnaseq

Transposon_brad

treemix_workflow

vartrix

Single-Cell Genotyping Tool

velocyto.R

Modified version of velocyto.R to export arrow coordinate without setting returndetails to True