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Health Data Research UK (HDRUK)

Health Data Research UK

HDRUK

Geek Repo

Not-for-profit public organisation focused on unifying the UK health data asset for research and innovation

Location:London

Home Page:www.hdruk.ac.uk

Twitter:@HDR_UK

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Health Data Research UK's repositories

COALESCE

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DaCVaP

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Gateway-Auth-Server

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HDRUK_AppliedML

This repository contains code and supporting material for the HDRUK Summer School Course on Applied Deep Learning, August 22nd 2019

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OMOP

Community for OMOP users in the UK

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openpathology-web

Openpathology website

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risk-score-builder

Map clinical risk score concepts to structured definitions using ontologies, calculate structured risk scores from NLP.

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Winterfell

Generate complex, validated and extendable JSON-based forms in React.

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chronological-map-phenotypes

Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.

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accredited-researchers-api

Accredited Researchers API Stub

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clinical-trials

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dar-integration-sandbox

Test server for DAR outbound integration

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gateway-helm-charts

A collection of helm charts based on applications

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gateway-widgets

Gateway widgets for collaborators

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GatewayAutomation

Regression Automation test scripts

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gatk

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

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hdruk_bbmri_hack

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KGPhenotyping

knowledge graph based phenotyping

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loftee

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medicines-dashboard

A medicine dashboard

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metadata-visualiser

helper function and maps for visualising metadata transformations

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openprescribing

A Django app providing a REST API and dashboards for the HSCIC's GP prescribing data

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phenomenet-vp

A phenotype-based tool for variant prioritization in WES and WGS data

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rake-nltk

Python implementation of the Rapid Automatic Keyword Extraction algorithm using NLTK.

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react-core

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seqtk

Toolkit for processing sequences in FASTA/Q formats

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simple-gcp-logging

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synthea-profiling

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uk-vaccine-breakthrough-autumn-2022

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vec2sparql

SPARQL Endpoint with functions for computing embedding similarities

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